Data & databases

Supplementary data files in public repositories


Passow et al. (in press) Mol. Ecol. GitHubGenBank Sequence Read Archive
Bagley et al. (in press) Biol. J Linn. Soc. Dryad Digital Repository
Culumber & Tobler (2017) Nat. Ecol. Evol. GitHub
Greenway et al. (2016) Evolution Dryad Digital Repository
Riesch et al. (2016) BMC Evol. Biol. Dryad Digital Repository
Kelley et al. (2016) Mol. Biol. Evol. GenBank Sequence Read Archive
Culumber et al. (2015) Evolution Dryad Digital Repository
Tobler et al. (2014) J. Evol. Biol. Dryad Digital Repository
Husemann et al. (2014) J. Evol. Biol. Dryad Digital Repository
Plath et al. (2013) Evolution Dryad Digital Repository
Carson et al. (2012) Mol. Ecol. Dryad Digital Repository


Supplementary data files hosted locally


Kelley et al. (2012): Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome. BMC Genomics.

Raw data

The table below contains the raw data files both for the forward and the reverse sequencing reactions obtained from Illumina Hiseq runs on cDNA generated from Poecilia mexicana gill tissues. Right click on the links to download linked file.

Specimen ID  Source Forward Reverse
MX05 Arroyo Rosita (Pichucalco drainage) MX05F.fastq MX05R.fastq
MX06 Arroyo Rosita (Pichucalco drainage) MX06F.fastq MX06R.fastq
MX07 Arroyo Rosita (Pichucalco drainage) MX07F.fastq MX07R.fastq
MX61 Arroyo Bonita (Tacotalpa drainage) MX61F.fastq MX61R.fastq
MX62 Arroyo Bonita (Tacotalpa drainage) MX62F.fastq MX62R.fastq
Mx63 Arroyo Bonita (Tacotalpa drainage) MX63F.fastq MX63R.fastq

 

Processed data

Right click on the links to download linked file.

Unique loci in the assembled transcriptome of P. mexicana  Pmex_uniqueloci.fasta
Annotation database with top blast hits for each transcript. The table provides Genbank accession numbers, basic statistics, and sequence descriptions for annoted transcripts. Pmex_annotationsummary.xlsx
Single Nucleotide Polymorphism (SNP) database for P. mexicana. The table provides information about SNP position, alleles, annotation [synonymous (syn), non-synonymous (non), untranslated region (utr)], and allele counts in each drainage for both populations. SNP_database.xlsx