Supplementary data files in public repositories
Supplementary data files hosted locally
Kelley et al. (2012): Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome. BMC Genomics.
Raw data
The table below contains the raw data files both for the forward and the reverse sequencing reactions obtained from Illumina Hiseq runs on cDNA generated from Poecilia mexicana gill tissues. Right click on the links to download linked file.
| Specimen ID | Source | Forward | Reverse |
| MX05 | Arroyo Rosita (Pichucalco drainage) | MX05F.fastq | MX05R.fastq |
| MX06 | Arroyo Rosita (Pichucalco drainage) | MX06F.fastq | MX06R.fastq |
| MX07 | Arroyo Rosita (Pichucalco drainage) | MX07F.fastq | MX07R.fastq |
| MX61 | Arroyo Bonita (Tacotalpa drainage) | MX61F.fastq | MX61R.fastq |
| MX62 | Arroyo Bonita (Tacotalpa drainage) | MX62F.fastq | MX62R.fastq |
| Mx63 | Arroyo Bonita (Tacotalpa drainage) | MX63F.fastq | MX63R.fastq |
Processed data
Right click on the links to download linked file.
| Unique loci in the assembled transcriptome of P. mexicana | Pmex_uniqueloci.fasta |
| Annotation database with top blast hits for each transcript. The table provides Genbank accession numbers, basic statistics, and sequence descriptions for annoted transcripts. | Pmex_annotationsummary.xlsx |
| Single Nucleotide Polymorphism (SNP) database for P. mexicana. The table provides information about SNP position, alleles, annotation [synonymous (syn), non-synonymous (non), untranslated region (utr)], and allele counts in each drainage for both populations. | SNP_database.xlsx |